RetrogeneDB ID: | retro_fcat_792 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:115803931..115804175(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 59.52 % |
Parental protein coverage: | 51.9 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KEAIEGTYIDKKCPF-TGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPC |
.....GTYI..K..F...NVSIRG.I.SG.VTK.KM.R..VI..DYLHY..KYN.FEK.HKN.SVH..P. | |
Retrocopy | QDTFKGTYIGRKFSF<SANVSIRGWIPSGLVTKAKM*RVTVI**DYLHYVQKYNCFEKCHKNKSVHMFPA |
Parental | -FRDVQIGDIVTVG |
.F.DV.IG..VTVG | |
Retrocopy | <FGDVKIGNTVTVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 501 .27 RPM |
SRP017611_liver | 0 .00 RPM | 210 .87 RPM |