RetrogeneDB ID: | retro_fcat_507 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:122042447..122042910(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 70.51 % |
Parental protein coverage: | 98.1 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGF-KTPKEAIEGTYIDKKCPFTGNVSIRGR |
DIQTERAYQKQ.TIFQNKKR.LL.E.GKEK.P..YKN..LGF...P.EA.E.TY.DKKCPFTGNVSI.G. | |
Retrocopy | DIQTERAYQKQLTIFQNKKRILLREIGKEKFPQHYKN-SLGF>EMPTEATEDTYSDKKCPFTGNVSI*GQ |
Parental | ILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFN |
ILSGVV..MK.QRTI.I..DYLH.I.KYN.F.K.HKN.S.H.S.CFRD...GDI.TVGEC...SKTV..N | |
Retrocopy | ILSGVVATMKIQRTIFIH*DYLHCIPKYNCFKKHHKNISMHPSLCFRDIHVGDIITVGECQLSSKTVCCN |
Parental | VLKVTKAAGTKKQFQK |
VLKVTKA.G.KKQ..K | |
Retrocopy | VLKVTKATGIKKQLWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 501 .27 RPM |
SRP017611_liver | 0 .00 RPM | 210 .87 RPM |