RetrogeneDB ID: | retro_amel_1144 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192953.1:591227..591871(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSAMEG00000000670 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 78.34 % |
Parental protein coverage: | 99.54 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | SSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQ |
SS.VS..T.Y.AV.EVLHGNQ.KR.KF.E.VELQI.LKNYD..KDK.FS.T.RLKS...PKFS.CVLGD. | |
Retrocopy | SSRVSPHTPY*AVWEVLHGNQCKRWKF*EMVELQIGLKNYDFEKDKHFSSTIRLKSSQGPKFSICVLGD* |
Parental | QHCDEAKAVDIPHM-DIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTH |
Q.CDEAKAVDIP.M...E.LKKL.K.KKLVKKLAKKY.AFLA.ESLIKQIP.ILGPGLNKAG.FPSLLTH | |
Retrocopy | QLCDEAKAVDIPYM<GMEVLKKLTKDKKLVKKLAKKY-AFLALESLIKQIP*ILGPGLNKAGNFPSLLTH |
Parental | NENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM |
NENMVAKVDEVKS.IKFQMKKVL.L..A.GH.KMTD.ELVYNIHLAVNFLVSLLKKN..N..ALYIKS.. | |
Retrocopy | NENMVAKVDEVKSMIKFQMKKVLHLPLAIGHIKMTDEELVYNIHLAVNFLVSLLKKN*KNSWALYIKSSE |
Parental | GKPQRLY |
GKPQ.LY | |
Retrocopy | GKPQCLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000670 | 13 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Felis catus | ENSFCAG00000012904 | 7 retrocopies | |
Homo sapiens | ENSG00000198755 | 13 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000015907 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008650 | 13 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009431 | 6 retrocopies |