RetrogeneDB ID: | retro_rnor_43 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:26231533..26232199(-) | ||
Located in intron of: | ENSRNOG00000029711 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031078 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl10a | ||
Ensembl ID: | ENSRNOG00000000505 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L10a [Source:UniProtKB/Swiss-Prot;Acc:P62907] |
Percent Identity: | 97.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGD |
MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGD | |
Retrocopy | MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGD |
Parental | QQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTH |
QQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKL.KKYD.FLASESLIKQIPRILGPGLNKAGKFPSLLTH | |
Retrocopy | QQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLDKKYDGFLASESLIKQIPRILGPGLNKAGKFPSLLTH |
Parental | NENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM |
NENMVAKVDEVKSTIKFQMKK.LCLAVAVGH.KMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM | |
Retrocopy | NENMVAKVDEVKSTIKFQMKKLLCLAVAVGHMKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM |
Parental | GKPQRLY |
GKPQ.LY | |
Retrocopy | GKPQHLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .52 RPM |
SRP017611_kidney | 0 .07 RPM | 59 .45 RPM |
SRP017611_liver | 0 .00 RPM | 44 .44 RPM |