RetrogeneDB ID: | retro_amel_318 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192384.1:3011181..3011814(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSAMEG00000000670 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 98.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQK-DKRFSGTVRLKSTPRPKFSVCVLGDQQH |
VS.DT.YE.V.EVL.....K..KFLE.VELQ.SLKNYD..K.DK.F.GTVRLKST..PKFS.CVLGDQ.. | |
Retrocopy | VSHDTSYEVVQEVLPHSWYKCPKFLEMVELQVSLKNYDSSK<DKCFLGTVRLKSTLHPKFSICVLGDQPC |
Parental | CDEAKAVDIP-HMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNE |
C.E.KAVDIP.HMDIEALKKLNKNKK.VKKLAKKYDAFLASESLIKQIP.IL..GLNK...FP.LLTHNE | |
Retrocopy | CNESKAVDIP<HMDIEALKKLNKNKK*VKKLAKKYDAFLASESLIKQIP*ILDQGLNKPSSFPPLLTHNE |
Parental | NMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM-G |
NMVA.V.E.KSTIKFQMKKVLCLAVA.GH.KMTDDELVY.IHLAVNFLVS.L.K.WQN..ALYIKSTM.G | |
Retrocopy | NMVARVNEGKSTIKFQMKKVLCLAVAAGHMKMTDDELVYSIHLAVNFLVSFL-KSWQNIQALYIKSTM<G |
Parental | KPQRLY |
.PQ.LY | |
Retrocopy | QPQHLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000670 | 13 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Felis catus | ENSFCAG00000012904 | 7 retrocopies | |
Homo sapiens | ENSG00000198755 | 13 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000015907 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008650 | 13 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009431 | 6 retrocopies |