Parental gene:

RPL10A, ENSGGOG00000028140

Aliases:None
Description:Ribosomal protein [Source:UniProtKB/TrEMBL;Acc:G3RV13]
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:36450320..36452700(+)


>ENSGGOG00000028140
ATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCCGCAA
GTTCCTGGAGACGGTGGAGTTGCAGATCAGCTTGAAGAACTATGACCCCCAGAAGGACAAGCGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACCCCCCGCCCTAAGTTCTCTGTGTGTGTCCTGGGGGACCAGCAGCACTGTGACGAGGCTAAGGCCGTG
GATATCCCCCACATGGACATCGAGGCGCTGAAAAAACTCAACAAGAATAAAAAACTGGTCAAGAAGCTGGCGAAGAAGTA
TGATGCGTTTTTGGCCTCAGAGTCTCTGATCAAGCAGATTCCACGAATCCTCGGCCCAGGTTTAAATAAGGCAGGAAAGT
TCCCTTCCCTGCTCACACACAACGAAAACATGGTGGCCAAAGTGGATGAGGTGAAGTCCACAATCAAGTTCCAAATGAAG
AAGGTGTTATGTCTGGCTGTAGCTGTTGGTCACGTGAAGATGACAGACGATGAGCTTGTGTATAACATTCACCTGGCTGT
TAACTTCTTGGTGTCATTGCTCAAGAAAAACTGGCAGAATGTCCGGGCCTTATATATCAAGAGCACCATGGGCAAGCCCC
AGCGCCTCTATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 158 .10 RPM
SRP007412_cerebellum 165 .67 RPM
SRP007412_heart 109 .04 RPM
SRP007412_kidney 448 .06 RPM
SRP007412_liver 304 .38 RPM
SRP007412_testis 195 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000670 possible_ortholog 13 retrogenes
retro_amel_1144, retro_amel_1223, retro_amel_1262, retro_amel_1591, retro_amel_1813, retro_amel_198, retro_amel_318, retro_amel_320, retro_amel_417, retro_amel_520, retro_amel_609, retro_amel_710, retro_amel_970,
Canis familiaris ENSCAFG00000001318 ortholog_one2one 18 retrogenes
retro_cfam_1118, retro_cfam_1200, retro_cfam_1222, retro_cfam_124, retro_cfam_1501, retro_cfam_1775, retro_cfam_1867, retro_cfam_2002, retro_cfam_2141, retro_cfam_281, retro_cfam_337, retro_cfam_347, retro_cfam_413, retro_cfam_847, retro_cfam_907, retro_cfam_911, retro_cfam_920, retro_cfam_986,
Echinops telfairi ENSETEG00000013325 possible_ortholog 2 retrogenes
retro_etel_1974, retro_etel_326,
Felis catus ENSFCAG00000012904 possible_ortholog 7 retrogenes
retro_fcat_1144, retro_fcat_1488, retro_fcat_1561, retro_fcat_1971, retro_fcat_210, retro_fcat_262, retro_fcat_560,
Homo sapiens ENSG00000198755 possible_ortholog 13 retrogenes
retro_hsap_142, retro_hsap_1462, retro_hsap_1710, retro_hsap_177, retro_hsap_1935, retro_hsap_2795, retro_hsap_3025, retro_hsap_3245, retro_hsap_3353, retro_hsap_337, retro_hsap_3949, retro_hsap_4025, retro_hsap_4040,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Myotis lucifugus ENSMLUG00000000080 ortholog_one2one 10 retrogenes
retro_mluc_1053, retro_mluc_1526, retro_mluc_1611, retro_mluc_1815, retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751, retro_mluc_902, retro_mluc_918,
Macaca mulatta ENSMMUG00000015907 possible_ortholog 6 retrogenes
retro_mmul_1931, retro_mmul_2041, retro_mmul_2321, retro_mmul_2330, retro_mmul_306, retro_mmul_583,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Nomascus leucogenys ENSNLEG00000008650 possible_ortholog 13 retrogenes
retro_nleu_1174, retro_nleu_1210, retro_nleu_1697, retro_nleu_1778, retro_nleu_1980, retro_nleu_2055, retro_nleu_2342, retro_nleu_2436, retro_nleu_2879, retro_nleu_662, retro_nleu_838, retro_nleu_986, retro_nleu_989,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Oryctolagus cuniculus ENSOCUG00000004065 ortholog_one2one 2 retrogenes
retro_ocun_130, retro_ocun_4,
Pan troglodytes ENSPTRG00000018085 ortholog_one2one 13 retrogenes
retro_ptro_1157, retro_ptro_1293, retro_ptro_142, retro_ptro_167, retro_ptro_1892, retro_ptro_2041, retro_ptro_2134, retro_ptro_2193, retro_ptro_2681, retro_ptro_269, retro_ptro_2729, retro_ptro_2737, retro_ptro_994,
Pteropus vampyrus ENSPVAG00000002763 ortholog_one2one 9 retrogenes
retro_pvam_1107, retro_pvam_1223, retro_pvam_123, retro_pvam_1294, retro_pvam_1440, retro_pvam_345, retro_pvam_722, retro_pvam_775, retro_pvam_906,
Rattus norvegicus ENSRNOG00000000505 possible_ortholog 4 retrogenes
retro_rnor_2302, retro_rnor_37, retro_rnor_400, retro_rnor_43,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Ictidomys tridecemlineatus ENSSTOG00000023366 ortholog_one2one 3 retrogenes
retro_itri_1097, retro_itri_524, retro_itri_847,
Tursiops truncatus ENSTTRG00000009431 possible_ortholog 6 retrogenes
retro_ttru_100, retro_ttru_1137, retro_ttru_1325, retro_ttru_1477, retro_ttru_205, retro_ttru_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_1 86.18 100.00
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2. retro_ggor_57 93.75 66.36
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3. retro_ggor_234 72.03 64.52
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4. retro_ggor_358 80.13 69.12
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5. retro_ggor_1124 83.87 70.51
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6. retro_ggor_1282 80.27 100.00
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7. retro_ggor_1407 64.67 82.95
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8. retro_ggor_2088 82.65 100.00
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9. retro_ggor_2273 90.37 100.00
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10. retro_ggor_2702 79.00 100.00
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Download FASTA sequences of all ENSGGOG00000028140 retrocopies