RetrogeneDB ID: | retro_btau_1332 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:95536876..95537282(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC8 | ||
Ensembl ID: | ENSBTAG00000018385 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.84 % |
Parental protein coverage: | 52.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR-ALDVIQAGKEYVEHTVKERKKQLKK |
KRFRQLSILV.PDK.QD.ADRAQKA.EAVDKAYKLL..QEQK.R.ALD.IQAGKE.VEHTVKERKKQL.K | |
Retrocopy | KRFRQLSILVYPDKTQDAADRAQKASEAVDKAYKLLPGQEQKQR<ALDAIQAGKEAVEHTVKERKKQLNK |
Parental | EGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRK-EREAKEMHERKRQREEEIEAQEKAKREREWQK |
EG.PTNVEEDDPELFKQA.YKQTMKL.AEL.IKR..ER..K................EK........K | |
Retrocopy | EGRPTNVEEDDPELFKQATYKQTMKLSAEL*IKRQ<ERAMKGSDKGRKRLKFKQKPKEKGSSRKFFSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 14 .49 RPM |
ERP005899_muscle | 0 .05 RPM | 23 .81 RPM |
SRP017611_brain | 0 .05 RPM | 25 .40 RPM |
SRP017611_kidney | 0 .06 RPM | 25 .31 RPM |
SRP017611_liver | 0 .00 RPM | 8 .61 RPM |
SRP030211_testis | 0 .47 RPM | 38 .77 RPM |