RetrogeneDB ID: | retro_fcat_203 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:197541666..197542251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC8 | ||
Ensembl ID: | ENSFCAG00000013393 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470] |
Percent Identity: | 71.14 % |
Parental protein coverage: | 78.66 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | APGESGASAGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEE |
A.G.S..SAG.GS.EEAFMTFYSEVKQIEK.DSVLTSK.QIER.T.P.SS.FNLNPFEVLQIDPEVTDE. | |
Retrocopy | ALGMSSDSAGRGSIEEAFMTFYSEVKQIEKTDSVLTSKSQIERSTCPVSSCFNLNPFEVLQIDPEVTDEG |
Parental | IKKRFRQLSILVHPDKNQDDADRAQKAF-EAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQL |
IKK.F.QLSILVHPDKN.DDAD...K.F.EAVD.AYKLLL.QEQ.KR.LD..QAGKEY..HT..E..KQL | |
Retrocopy | IKKTF*QLSILVHPDKN*DDAD-STKGF>EAVDEAYKLLLHQEQRKRTLDINQAGKEYIGHTGRE*NKQL |
Parental | KK-EGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEK |
K..E.KPTNVEE.DPELFKQ.VYKQT...FAELEI.R.ER.A.....R.R....E....EK | |
Retrocopy | KE<ETKPTNVEEGDPELFKQTVYKQTATRFAELEIERQERGAR---ARARGAGKEVTGGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .22 RPM |
SRP017611_liver | 0 .00 RPM | 16 .68 RPM |