RetrogeneDB ID: | retro_mmul_2078 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:45782488..45783259(-) | ||
Located in intron of: | ENSMMUG00000002022 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4981 | ||
Ensembl ID: | ENSMMUG00000017080 | ||
Aliases: | None | ||
Description: | dnaJ homolog subfamily C member 8 [Source:RefSeq peptide;Acc:NP_001247983] |
Percent Identity: | 94.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASGESGTSGSGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD |
MAASGESGTSGSGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD | |
Retrocopy | MAASGESGTSGSGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD |
Parental | EEIKKRFRQLSILVHPDKN----QDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKE |
EEIKKRFRQLSILVHP.......QDDADRAQKAFEAVDKAYKLLLDQEQKKR.LDVIQAGKEYV.HTVKE | |
Retrocopy | EEIKKRFRQLSILVHPCQDFCQNQDDADRAQKAFEAVDKAYKLLLDQEQKKRVLDVIQAGKEYVQHTVKE |
Parental | RKKQLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKRER |
RKKQLKKEGKPTIVEEDD.ELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKRER | |
Retrocopy | RKKQLKKEGKPTIVEEDDSELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKRER |
Parental | EWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE |
EWQKNFEESRDGR.DSWRNFQANTKGKK.KK.RTFLRPPKVKMEQRE | |
Retrocopy | EWQKNFEESRDGRMDSWRNFQANTKGKKDKKKRTFLRPPKVKMEQRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .08 RPM |
SRP007412_brain_prefrontal_cortex | 0 .40 RPM | 31 .57 RPM |
SRP007412_cerebellum | 0 .06 RPM | 10 .72 RPM |
SRP007412_heart | 0 .06 RPM | 8 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .46 RPM |
SRP007412_liver | 0 .04 RPM | 2 .81 RPM |
SRP007412_testis | 0 .19 RPM | 8 .33 RPM |