RetrogeneDB ID: | retro_mmus_916 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:10724175..10724583(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnajc8 | ||
Ensembl ID: | ENSMUSG00000054405 | ||
Aliases: | Dnajc8, 1110021D09Rik, 2010009J04Rik, AL024084, AU019262, AU044514 | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:MGI Symbol;Acc:MGI:1915848] |
Percent Identity: | 95.59 % |
Parental protein coverage: | 53.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAASGESGASGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD |
MAASGESGASGGGGSTEEAF.TFY.EVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD | |
Retrocopy | MAASGESGASGGGGSTEEAFVTFYTEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD |
Parental | EEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKE |
EEIKKRFRQLSILVHPDKNQDDADRA.KAFEAVDKAYKLLLD.EQKKR.LDVIQA.KEYVEHTVKE | |
Retrocopy | EEIKKRFRQLSILVHPDKNQDDADRAKKAFEAVDKAYKLLLD*EQKKRVLDVIQARKEYVEHTVKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 53 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .22 RPM |
SRP007412_heart | 0 .00 RPM | 48 .84 RPM |
SRP007412_kidney | 0 .02 RPM | 50 .07 RPM |
SRP007412_liver | 0 .00 RPM | 24 .71 RPM |
SRP007412_testis | 0 .00 RPM | 52 .51 RPM |