RetrogeneDB ID: | retro_eeur_536 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_340904:45680..46167(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC8 | ||
Ensembl ID: | ENSEEUG00000011136 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470] |
Percent Identity: | 58.93 % |
Parental protein coverage: | 62.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVK-ERKKQ--LKKEGKPTNVEEDDPE |
.D.ADR...AFEA.DK...LLLDQEQKK..LD..QAG.E...HTVK.E...Q..LK.EGKP..VEE.D.E | |
Retrocopy | KDNADRTRMAFEATDKVHTLLLDQEQKKKILDTTQAGNEFMGHTVK<EQQQQQLLKQEGKPSSVEEADAE |
Parental | LFKQAVYKQTMKLFAELEIKRKEREAKEMH-ERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRN |
LFKQAV.KQT...FAEL..K.KE.E.KEMH..RK.Q.E.......KAKRERE.QKN..ESR.G..DS... | |
Retrocopy | LFKQAVCKQTK*SFAELGNKKKEGEVKEMH<LRKQQKEKD-SSPRKAKRERE*QKNIKESREG-*DSGQS |
Parental | FQANTKGKKEKKNRTFLRPPKVKMEQRE |
FQANTKGK.EKK...F......K.EQ.E | |
Retrocopy | FQANTKGKREKKPH-FPEIIRMKIEQSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 61 .70 RPM |
SRP017611_liver | 0 .00 RPM | 21 .22 RPM |