RetrogeneDB ID: | retro_itri_1775 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393754.1:454224..454680(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020411 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC8 | ||
Ensembl ID: | ENSSTOG00000012834 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470] |
Percent Identity: | 85.06 % |
Parental protein coverage: | 59.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKER--KKQLKKEGKPINVEEDDPELFKQAVYKQTMKL |
AVDKAYKL.LDQEQKKR.L...QAGKEYV..TVKER..KKQLKKEGKP.NVEEDDPELFKQAVYKQTMKL | |
Retrocopy | AVDKAYKLFLDQEQKKRTLELTQAGKEYVGYTVKERGEKKQLKKEGKPGNVEEDDPELFKQAVYKQTMKL |
Parental | FAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEE-SRDGRVDSWRNFQANTKGKKEKK- |
FAELE.KRKERE.KEMHE.KR.REE.IEAQEKAK.EREWQKNFEE.SRDG.VDSW.NFQAN.KGKKEKK. | |
Retrocopy | FAELEVKRKEREVKEMHEMKRPREEAIEAQEKAK*EREWQKNFEE>SRDGWVDSWQNFQANIKGKKEKK< |
Parental | NRTFLRPPKVKMEQ |
NR.FLRP.KVKMEQ | |
Retrocopy | NRIFLRPLKVKMEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |