RetrogeneDB ID: | retro_itri_1361 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393456.1:1817730..1818219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC8 | ||
Ensembl ID: | ENSSTOG00000012834 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470] |
Percent Identity: | 96.95 % |
Parental protein coverage: | 64.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPINVEEDDPELFK |
QDDADRAQKAFEAVDKAYKLLLDQE.KKRALDVIQAGKEYV.HTVKERKK..KKEGKP.NVEEDDPELFK | |
Retrocopy | QDDADRAQKAFEAVDKAYKLLLDQEHKKRALDVIQAGKEYVKHTVKERKKT-KKEGKPTNVEEDDPELFK |
Parental | QAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQAN |
QAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQAN | |
Retrocopy | QAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQAN |
Parental | TKGKKEKKNRTFLRPPKVKMEQRE |
TKGKKEKKNRTFLRPPKVKMEQRE | |
Retrocopy | TKGKKEKKNRTFLRPPKVKMEQRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |