RetrogeneDB ID: | retro_pabe_2351 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:139183912..139184349(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC8 | ||
Ensembl ID: | ENSPPYG00000025833 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 64.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV |
DPEVTDEEIKK...QLSILVHPDKNQDDADRAQKAFEAVDKA.KLLLDQEQKKR.LDVIQAGKEYVEHTV | |
Retrocopy | DPEVTDEEIKKQ--QLSILVHPDKNQDDADRAQKAFEAVDKACKLLLDQEQKKRTLDVIQAGKEYVEHTV |
Parental | KERKKQLKKEG-KPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAK |
KERKKQ..KE.......E.D.PELFKQAVYKQTMKLFAELE.KRKEREAKEMHERK.QR..EIEAQEKAK | |
Retrocopy | KERKKQRRKEN<PTIVEEDD-PELFKQAVYKQTMKLFAELEVKRKEREAKEMHERKGQRGGEIEAQEKAK |
Parental | REREWQKNFE |
REREWQKNFE | |
Retrocopy | REREWQKNFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 5 .20 RPM | 20 .62 RPM |
SRP007412_cerebellum | 1 .82 RPM | 19 .94 RPM |
SRP007412_heart | 1 .93 RPM | 9 .27 RPM |
SRP007412_kidney | 3 .05 RPM | 13 .76 RPM |
SRP007412_liver | 2 .11 RPM | 9 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2840 |