RetrogeneDB ID: | retro_dnov_914 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_12092:13994..14330(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DNAJC8 | ||
| Ensembl ID: | ENSDNOG00000015452 | ||
| Aliases: | None | ||
| Description: | DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470] |
Retrocopy-Parental alignment summary:
>retro_dnov_914
GTTCTTAAAATAAATCCTGAAATGACAGATAAGGAAATACAAAAGAGGTTTCAGCAGCTATCCGTATTGATGCATCCTGA
CAAAAATCAAGACGATGATGACAGACCACAGAAGGCTTTTGAAGCCGTGGACAAAACTTACAAGTTTCTACTGGATCAGG
GATGGAAGAAAAAGGTCCTGGATATAATTCAGGCAGGAAAGGAATATGTGGAACACACTGTGAAAGAGCAGAAAAAGCAA
TTAAAGAAGGAAGGAAAACCTACAAATGTGGAAGAGGGTGATCCTGAGCTGTATGAACAAGCACTATTCAAATAGACAAT
GAAACTCTTTGCCGAA
ORF - retro_dnov_914 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.21 % |
| Parental protein coverage: | 57.37 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYV |
| VL.I.PE.TD.EI.KRF.QLS.L.HPDKNQDD.DR.QKAFEAVDK.YK.LLDQ..KK..LD.IQAGKEYV | |
| Retrocopy | VLKINPEMTDKEIQKRFQQLSVLMHPDKNQDDDDRPQKAFEAVDKTYKFLLDQGWKKKVLDIIQAGKEYV |
| Parental | EHTXXXXKKQLKKE-KPTNVEE--DELFKQAVYKQTMKLFAE |
| EHT....KKQLKKE.KPTNVEE...EL..QA..K.TMKLFAE | |
| Retrocopy | EHTVKEQKKQLKKEGKPTNVEEGDPELYEQALFK*TMKLFAE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 42 .78 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 67 .08 RPM |
| SRP012922_heart | 0 .00 RPM | 46 .87 RPM |
| SRP012922_kidney | 0 .00 RPM | 55 .85 RPM |
| SRP012922_liver | 0 .00 RPM | 20 .43 RPM |
| SRP012922_lung | 0 .00 RPM | 113 .32 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 44 .31 RPM |
| SRP012922_spleen | 0 .00 RPM | 87 .91 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_914 was not experimentally validated.