RetrogeneDB ID: | retro_btau_1437 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:85614975..85615475(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSBTAG00000001553 | ||
Aliases: | HNRNPA1, HNRPA1, hnRNP A1 | ||
Description: | Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P09867] |
Percent Identity: | 69.01 % |
Parental protein coverage: | 52.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSKSESPKEPEQLR-KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD |
MSKSE.PKE..QL..KL....LSFETTDESLRSHFEQWG.LTDCVVMR..NTK.SR.FG.VT..TV..VD | |
Retrocopy | MSKSEFPKELKQLQ<KLSVRHLSFETTDESLRSHFEQWGMLTDCVVMRASNTKHSRSFGLVTCTTVGKVD |
Parental | AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIF-VGGIKEDTEEHHLRDYFEQYGKIEVIEIMT |
A.M.ARP.KV......P..AVSREDSQRPGAHLTV...F..GG.KEDTEEH.LRDYFE.YG..EV.EIMT | |
Retrocopy | AVMKARPRKVTEELWSPT-AVSREDSQRPGAHLTVXXXF>MGGTKEDTEEHYLRDYFEPYGETEVFEIMT |
Parental | DRGSGKKRGFAFVTFDD-HDSVDKIVIQKYH |
D..SGKKRG..F.TFD...D..DK.VIQK.H | |
Retrocopy | D*DSGKKRGLVFATFDT<RDAIDKTVIQKLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 64 .89 RPM |
ERP005899_muscle | 0 .00 RPM | 523 .83 RPM |
SRP017611_brain | 0 .00 RPM | 164 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 249 .12 RPM |
SRP017611_liver | 0 .00 RPM | 85 .48 RPM |
SRP030211_testis | 0 .00 RPM | 109 .87 RPM |