RetrogeneDB ID: | retro_btau_229 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:65648266..65648596(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000008020 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX6A1 | ||
Ensembl ID: | ENSBTAG00000012788 | ||
Aliases: | COX6A1, VIA L | ||
Description: | Cytochrome c oxidase subunit 6A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P13182] |
Percent Identity: | 96.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAAGSRVFGLLGRSRLQLSRCMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEEERPE |
MAAAAGSRV.GLLGRS.LQLSRCMSSG.HGEEGSAR.WKALTYFVALPGVGVSMLNVFLKSHHGEEERPE | |
Retrocopy | MAAAAGSRVSGLLGRSGLQLSRCMSSGTHGEEGSARIWKALTYFVALPGVGVSMLNVFLKSHHGEEERPE |
Parental | FVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE |
FVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE | |
Retrocopy | FVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 35 .18 RPM |
ERP005899_muscle | 0 .05 RPM | 255 .29 RPM |
SRP017611_brain | 0 .00 RPM | 97 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 197 .14 RPM |
SRP017611_liver | 0 .00 RPM | 58 .75 RPM |
SRP030211_testis | 0 .01 RPM | 39 .34 RPM |