RetrogeneDB ID: | retro_pabe_3206 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7_random:13912827..13913153(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005028 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAVGVSSVSRLLGRSRPQLGRPM-SSGAHGEEGSARMWKTLTFLVALPGVAVSMLNVYLKSRHGEHERP |
MA......V.RL.G.S.P.LG.P..SSG..G.EGSA.MWKTLT..V.LP.V.VSM..V.LK..HGEH.RP | |
Retrocopy | MAVAAAFWVPRLWGQSDPKLGQPR<SSGIYG*EGSASMWKTLTYFVVLPWVGVSMIIVFLKLHHGEHRRP |
Parental | EFIAYPHLRIRTKPFPWGDGNHTLFHNPRVNPLPTGYEDE |
E.I.YPHL.IR.K.F..GDGNH..FHN..VN...T.YEDE | |
Retrocopy | ELIPYPHLCIRSKSFL*GDGNHNVFHNFHVNLFLTAYEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 142 .65 RPM |
SRP007412_cerebellum | 0 .00 RPM | 58 .13 RPM |
SRP007412_heart | 0 .00 RPM | 12 .82 RPM |
SRP007412_kidney | 0 .00 RPM | 96 .06 RPM |
SRP007412_liver | 0 .00 RPM | 61 .66 RPM |