RetrogeneDB ID: | retro_ocun_174 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:4340015..4340342(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003977 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX6A1 | ||
Ensembl ID: | ENSOCUG00000009873 | ||
Aliases: | COX6A1, COX6A | ||
Description: | cytochrome c oxidase subunit VIa (COX6A1), nuclear gene encoding mitochondrial protein, mRNA [Source:RefSeq mRNA;Acc:NM_001170883] |
Percent Identity: | 70.64 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAAWSRVSRLLGRSRLQVGRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEEHERPE |
.A.AA.S.VS.LLGRS.L...RPMSSG.HG.EGSA...KA..YFV.L...G.SMLNVYLKSHHEEH.RPE | |
Retrocopy | VAVAAGSMVSQLLGRSCLC--RPMSSGTHGNEGSAPKQKAPNYFVKLCSMGESMLNVYLKSHHEEHWRPE |
Parental | FIAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE |
FIAY..L.IRS.PFPW.D.N...FH.PHVNPLPTGYEDE | |
Retrocopy | FIAYHYLHIRSRPFPWEDRNPPVFHTPHVNPLPTGYEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 201 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 242 .44 RPM |
SRP017611_liver | 0 .00 RPM | 50 .02 RPM |