RetrogeneDB ID: | retro_cfam_506 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:6463160..6463548(-) | ||
Located in intron of: | ENSCAFG00000001477 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000031458 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 6A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:J9P8X9] |
Percent Identity: | 58.52 % |
Parental protein coverage: | 54.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | PAHFPLPLPALRL----SRSIMASAAAVFRLSGLLGRSGAPLGRSMSSGAHG-EEGSARMWKALTYFVAL |
P....LP...L......SRS.M...A.....S.LLGRSGA.LG.SM.SGAH..EEGSA.MWKAL.YF..L | |
Retrocopy | PKEIILPSQSLKIK*LRSRSKMVVTAGSW-VSRLLGRSGA*LGQSMLSGAHSNEEGSAQMWKALPYFIEL |
Parental | PGVGVSMLNVFLKSH-HGEHERP-EFIAYPHLRIRSKPFPWGDGNHTL-FHNSHVNP-LPTGYED |
...GVSML.VFLKSH..GEH..P.EF.AY..L.IRSKPF..GDG.H.....NSHVNP..PTGYE. | |
Retrocopy | TSEGVSMLTVFLKSH<PGEHIEP>EFAAYDYLFIRSKPFLGGDGSHSI<SINSHVNP<FPTGYEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 129 .52 RPM |
SRP017611_brain | 0 .00 RPM | 114 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 381 .56 RPM |
SRP017611_liver | 0 .00 RPM | 76 .65 RPM |