RetrogeneDB ID: | retro_fcat_1653 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:34448285..34448600(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031188 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.77 % |
Parental protein coverage: | 96.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AASRFSGLLGRSGAQRGR-SMSSGAHGEEGSARMWKALTYFVALP-GVGVSMLNVFLKSHHGEHERPEFV |
A.S.FSGLLG..GAQ.G..S.SSGAHGEEGSA.MWK.....V.LP...GVSMLNVFLKSH.GE.ERP.FV | |
Retrocopy | AVSQFSGLLGQ*GAQLGH<SVSSGAHGEEGSAYMWKVFISLVGLP>SRGVSMLNVFLKSHLGEQERPKFV |
Parental | AYPHLRIRSKPFPWGDGNHTLFHNSHVNPLPTGYEDE |
AYPHL.IR..P.PWGDGNHT.FHNSH.NPLPTGYEDE | |
Retrocopy | AYPHLHIRANPVPWGDGNHTPFHNSHTNPLPTGYEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 233 .32 RPM |
SRP017611_liver | 0 .00 RPM | 88 .05 RPM |