RetrogeneDB ID: | retro_fcat_1505 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:32649557..32649873(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031188 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.25 % |
Parental protein coverage: | 96.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AASRFSGLLGRSGAQRGR-SMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEHERPEFVA |
A.SRF.GL.GRSGAQ.G..S.SSGAHGEEGSAR..KALTYFVALPGV.VSM.NVFL.SHH.E.ERP..VA | |
Retrocopy | AVSRFPGLPGRSGAQLGL>STSSGAHGEEGSART*KALTYFVALPGVEVSMQNVFLNSHHAERERP*LVA |
Parental | YPHLRIRSKPFPWGDGNHTLFHNSHVNPLPTGYEDE |
.PHLRIR.KPFPWGDGN.TLFH.SHVNPLPTG..DE | |
Retrocopy | SPHLRIRAKPFPWGDGNPTLFHDSHVNPLPTGQGDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 233 .32 RPM |
SRP017611_liver | 0 .00 RPM | 88 .05 RPM |