RetrogeneDB ID:

retro_fcat_886

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B3:24641618..24641935(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000031188
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_886
ATAGGAGTGGCAGCTGGGTCCGGGTTTCCAGGATGCTAGGGCAGTCCAGGGCACAGCTAGGAGGTCCATGTCAAGTGGGG
AGGACGGCTCAGCTAGCATGTGGAAGGCCCTCACCTACTTCTTAGTTCTCTCCCATGTGGGAGTGAGCATGCTGAATGTC
TTCTAATGTCGCATCATGGAGAGCATGAGAGACTTCAGTTCATTGCCTACCCCCCATCTCTGAATCAGGTCCAAGCCCTT
TCCCTGGGGGAGATGTTAATCATACTCTATTCCGTAACTCTTAAGTGAGTCCACTTCCAATGGGCTATATAGATGAA

ORF - retro_fcat_886 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.18 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalMAVAAASRFSG-LLGRSGAQRG-RSMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVF-LKSHHGEHE
..VAA.S.F.G..LG.S.AQ.G.RSMSS...GE.GSA.MWKALTYF..L..VGVSMLNVF.L.SHHGEHE
RetrocopyIGVAAGSGFPG<MLGQSRAQLG<RSMSS---GEDGSASMWKALTYFLVLSHVGVSMLNVF<LMSHHGEHE
ParentalRPEFVAY-PHLRIRSKPFPW-GDGNHTLFHNSHVNPLPTGYEDE
R..F.AY.PHL.IRSKPFPW.GD.NHTLF.NS.V.PLP.GY.DE
RetrocopyRLQFIAY>PHL*IRSKPFPW>GDVNHTLFRNS*VSPLPMGYIDE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 121 .43 RPM
SRP017611_kidney 0 .00 RPM 233 .32 RPM
SRP017611_liver 0 .00 RPM 88 .05 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_886 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_886 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 80 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000127881 retrocopy
Canis familiaris ENSCAFG000000314581 retrocopy
Choloepus hoffmanni ENSCHOG000000092222 retrocopies
Callithrix jacchus ENSCJAG000000011746 retrocopies
Cavia porcellus ENSCPOG000000064261 retrocopy
Equus caballus ENSECAG000000125122 retrocopies
Echinops telfairi ENSETEG000000168261 retrocopy
Felis catus ENSFCAG00000031188 9 retrocopies
Homo sapiens ENSG000001117751 retrocopy
Gorilla gorilla ENSGGOG000000141012 retrocopies
Myotis lucifugus ENSMLUG000000103304 retrocopies
Macaca mulatta ENSMMUG000000160002 retrocopies
Nomascus leucogenys ENSNLEG000000156444 retrocopies
Oryctolagus cuniculus ENSOCUG000000098736 retrocopies
Otolemur garnettii ENSOGAG0000000356118 retrocopies
Pongo abelii ENSPPYG000000050284 retrocopies
Pan troglodytes ENSPTRG000000055323 retrocopies
Pteropus vampyrus ENSPVAG000000022263 retrocopies
Rattus norvegicus ENSRNOG000000011702 retrocopies
Tupaia belangeri ENSTBEG000000080184 retrocopies
Tarsius syrichta ENSTSYG000000115411 retrocopy
Tursiops truncatus ENSTTRG000000001422 retrocopies
Vicugna pacos ENSVPAG000000103591 retrocopy



Copyright © RetrogeneDB 2014-2017