RetrogeneDB ID:

retro_nleu_1116

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397282.1:14490852..14491196(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000111775
Ensembl ID:ENSNLEG00000015644
Aliases:None
Description:Cytochrome c oxidase subunit 6A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:G1S0D9]


Retrocopy-Parental alignment summary:






>retro_nleu_1116
AAGGAGTCCAGGTAGAAAATGGCAGTGGCAGCTGCATTCTGGGTTCCTCGGCTGTGGGGTCAGTCCGATCCCAAATTGGG
GCAGCCACGTCCAGTGGTATCTATGGCTAGGAGGACTCAGCTAGTATGTGGAAGGCCCTCACCTACTTCATTGTGCTACC
TTAGGTGGGAGTGAGCAGGACAATTGTTTTCTTGAAGTTACATCATGGAGAGCACAGGAGATCTGAGTTGGTTCCTTACC
CCCATATCTGCATTAGATCCAAGCCTTTTCCTTGAGGCGATAGTAACCATACTCTATTTCGTAACCTTCGTGTGAATCTG
TTTCTAACTGCCTATGAAGATGAA

ORF - retro_nleu_1116 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.03 %
Parental protein coverage: 75.66 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRQSRSKMVAGGVLSVSRLLGRSRPQLGRPM-SSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHH
..SR.KM.......V.RL.G.S.P.LG.P..SSG..G.E.SA.MWK.LT.F..LP.V.VS...V.LK.HH
RetrocopyKESR*KMAVAAAFWVPRLWGQSDPKLGQPR<SSGIYG*EDSASMWKALTYFIVLP*VGVSRTIVFLKLHH
ParentalGEHERPEFIAYPHLRIRPKPFPWGDGNHTLFHNPHVNPLPTGYEDE
GEH.R.E...YPH..IR.KPFP.GD.NHTLF.N..VN...T.YEDE
RetrocopyGEHRRSELVPYPHICIRSKPFP*GDSNHTLFRNLRVNLFLTAYEDE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1116 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 74 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000127881 retrocopy
Canis familiaris ENSCAFG000000314581 retrocopy
Choloepus hoffmanni ENSCHOG000000092222 retrocopies
Cavia porcellus ENSCPOG000000064261 retrocopy
Equus caballus ENSECAG000000125122 retrocopies
Echinops telfairi ENSETEG000000168261 retrocopy
Felis catus ENSFCAG000000311889 retrocopies
Homo sapiens ENSG000001117751 retrocopy
Gorilla gorilla ENSGGOG000000141012 retrocopies
Myotis lucifugus ENSMLUG000000103304 retrocopies
Macaca mulatta ENSMMUG000000160002 retrocopies
Nomascus leucogenys ENSNLEG00000015644 4 retrocopies
Oryctolagus cuniculus ENSOCUG000000098736 retrocopies
Otolemur garnettii ENSOGAG0000000356118 retrocopies
Pongo abelii ENSPPYG000000050284 retrocopies
Pan troglodytes ENSPTRG000000055323 retrocopies
Pteropus vampyrus ENSPVAG000000022263 retrocopies
Rattus norvegicus ENSRNOG000000011702 retrocopies
Tupaia belangeri ENSTBEG000000080184 retrocopies
Tarsius syrichta ENSTSYG000000115411 retrocopy
Tursiops truncatus ENSTTRG000000001422 retrocopies
Vicugna pacos ENSVPAG000000103591 retrocopy



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