RetrogeneDB ID: | retro_fcat_1399 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:60119959..60120251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031188 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.7 % |
Parental protein coverage: | 89.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LLGRSGAQRGRSMSSGAHGE-EGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEHERPEFVAYPHLRIR |
LLG.S.AQ.G.S.SSG.HG..EGS...WKALTYFV.LPG.GVS.LN...KS.HGEH.RPEF.AYPHL.IR | |
Retrocopy | LLGQSRAQLGWSISSGTHGQ>EGST*RWKALTYFVTLPGMGVSTLNIW-KSNHGEHSRPEFHAYPHLFIR |
Parental | SKPFPWGDGNHTLFHNSHVNPLPTGYEDE |
SKPFPW.D.NH.L.HN.H...LPT.YEDE | |
Retrocopy | SKPFPWVDVNHILLHNAHAKLLPTSYEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 121 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 233 .32 RPM |
SRP017611_liver | 0 .00 RPM | 88 .05 RPM |