RetrogeneDB ID: | retro_cfam_2136 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:13806108..13806570(-) | ||
Located in intron of: | ENSCAFG00000012783 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHP1 | ||
Ensembl ID: | ENSCAFG00000009525 | ||
Aliases: | None | ||
Description: | calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433] |
Percent Identity: | 69.43 % |
Parental protein coverage: | 79.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDR-IINA |
MG..ASTLL..EELEEIK..T.FSHS.IT.LY..FTSLDKGENG.LS...FQ.IPEL.I.PLG....I.A | |
Retrocopy | MGPWASTLL*REELEEIK-QTNFSHSRITYLYCQFTSLDKGENGALS*DYFQLIPELVISPLGAG<FISA |
Parental | FFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR-LYDLDKDDKISRDELLQV |
FFPEGEDQVNF.GF..TLA.F.P.E...KSKD.N.PE.LNS.SNKL.FAF..LYDLDKDD.IS..EL.QV | |
Retrocopy | FFPEGEDQVNFHGFIKTLAQFHPTEYGGKSKDKNEPETLNS*SNKLYFAFL>LYDLDKDDRISHNELFQV |
Parental | LRMMVGVNISDEQLGSI |
L.MMVGVNI.DE...SI | |
Retrocopy | LCMMVGVNIPDEEPSSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 28 .39 RPM |
SRP017611_brain | 0 .00 RPM | 56 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .88 RPM |
SRP017611_liver | 0 .00 RPM | 10 .80 RPM |
Species | RetrogeneDB ID |
---|---|
Oryctolagus cuniculus | retro_ocun_68 |
Bos taurus | retro_btau_1785 |
Equus caballus | retro_ecab_1099 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009525 | 1 retrocopy |
retro_cfam_2136 ,
|
Cavia porcellus | ENSCPOG00000010577 | 2 retrocopies | |
Homo sapiens | ENSG00000187446 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007312 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017092 | 2 retrocopies | |
Mus musculus | ENSMUSG00000014077 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003465 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000005419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006370 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006942 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004742 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014503 | 1 retrocopy |