RetrogeneDB ID: | retro_nleu_1678 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397303.1:16651825..16652366(-) | ||
Located in intron of: | ENSNLEG00000004635 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000187446 | ||
Ensembl ID: | ENSNLEG00000003465 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.15 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGSRASTLLRDEELEEIKKETGFSHSQIT-RLYSRFTSLDKGE-NGTLSREDFQRIPELAINPLGDRIIN |
MGS..S.LL.DEELEEIKK...FSHSQIT..LYSRFTSLDKGE..GTLS.EDF.RIPEL.INPLG.RIIN | |
Retrocopy | MGSQPSMLLWDEELEEIKK-ISFSHSQIT<LLYSRFTSLDKGE<DGTLSHEDFLRIPELVINPLGNRIIN |
Parental | AFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQV |
AFFPEGED.VNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNS.SNKL.FAF.LYD.DKD.K.SRDEL.QV | |
Retrocopy | AFFPEGEDRVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNS*SNKLQFAFQLYDFDKDDKLSRDELIQV |
Parental | LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK |
LR.MV.VN.SDEQLGSI.DRTI.EAD.DGD.A.SFTEFVKVLEK | |
Retrocopy | LRLMVRVNTSDEQLGSITDRTIEEADEDGDNAVSFTEFVKVLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009525 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010577 | 2 retrocopies | |
Homo sapiens | ENSG00000187446 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007312 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017092 | 2 retrocopies | |
Mus musculus | ENSMUSG00000014077 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003465 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026538 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006370 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006942 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004742 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014503 | 1 retrocopy |