RetrogeneDB ID: | retro_hsap_3334 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:72316526..72317106(-) | ||
Located in intron of: | ENSG00000157107 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248930 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHP1 | ||
Ensembl ID: | ENSG00000187446 | ||
Aliases: | CHP1, CHP, SLC9A1BP, Sid470p, p22, p24 | ||
Description: | calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433] |
Percent Identity: | 84.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGSRASTLLRDEELEEIKKETGFSHSQIT-RLYSRFTSLDKGE-NGTLSREDFQRIPELAINPLGDRIIN |
MGS..S.LL.DEELEEIKK...FSHSQIT..LYSRFTSLDKGE..G.LS.EDF.RIPEL.INPLGDRIIN | |
Retrocopy | MGSQPSMLLWDEELEEIKK-ISFSHSQIT<LLYSRFTSLDKGE<DGILSHEDFLRIPELVINPLGDRIIN |
Parental | AFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQV |
.FFPEGEDQVNF.GFM.TLAHF.PIEDNEKSKDVNGPEPLNSRSNKL.FAFRLYD.DKD.K.SR.EL.QV | |
Retrocopy | VFFPEGEDQVNFHGFM*TLAHFHPIEDNEKSKDVNGPEPLNSRSNKLQFAFRLYDFDKDDKLSRGELIQV |
Parental | LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH |
L..MV.VNISDEQLGSIADRTIQEADQDGDSAIS.TEFVKVLEKVDVEQKMSI.FLH | |
Retrocopy | LHLMVRVNISDEQLGSIADRTIQEADQDGDSAISLTEFVKVLEKVDVEQKMSIQFLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 245 .75 RPM |
bodymap2_adrenal | 0 .00 RPM | 63 .78 RPM |
bodymap2_brain | 0 .12 RPM | 127 .14 RPM |
bodymap2_breast | 0 .06 RPM | 241 .40 RPM |
bodymap2_colon | 0 .00 RPM | 136 .98 RPM |
bodymap2_heart | 0 .00 RPM | 100 .74 RPM |
bodymap2_kidney | 0 .00 RPM | 197 .37 RPM |
bodymap2_liver | 0 .00 RPM | 308 .93 RPM |
bodymap2_lung | 0 .00 RPM | 189 .28 RPM |
bodymap2_lymph_node | 0 .00 RPM | 90 .84 RPM |
bodymap2_ovary | 0 .02 RPM | 94 .30 RPM |
bodymap2_prostate | 0 .00 RPM | 116 .17 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 237 .62 RPM |
bodymap2_testis | 0 .00 RPM | 89 .36 RPM |
bodymap2_thyroid | 0 .00 RPM | 124 .31 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 196 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2144 |
Gorilla gorilla | retro_ggor_1293 |
Pongo abelii | retro_pabe_2749 |
Macaca mulatta | retro_mmul_2088 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009525 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010577 | 2 retrocopies | |
Homo sapiens | ENSG00000187446 | 2 retrocopies |
retro_hsap_3334 , retro_hsap_3541,
|
Homo sapiens | ENSG00000221823 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007312 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017092 | 2 retrocopies | |
Mus musculus | ENSMUSG00000014077 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003465 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000005419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006370 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006942 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004742 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014503 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |