RetrogeneDB ID: | retro_mmus_2094 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:137747529..137747965(-) | ||
Located in intron of: | ENSMUSG00000085640 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Chp1 | ||
Ensembl ID: | ENSMUSG00000014077 | ||
Aliases: | Chp1, 1500003O03Rik, AA960066, AI046351, Cahp, Chp, Sid470p, p24, vac | ||
Description: | calcineurin-like EF hand protein 1 [Source:MGI Symbol;Acc:MGI:1927185] |
Percent Identity: | 52.7 % |
Parental protein coverage: | 74.87 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSR |
E.GTLS...FQ.I.ELAINP.GD...NAF.SEGE.QV.F...MRTL.HF.PIE.............LN.. | |
Retrocopy | EAGTLSLGGFQMILELAINPVGDSTSNAFISEGEAQVSF*LLMRTLTHF*PIEGHXXXXXXXXXXSLNCQ |
Parental | SNKLHFAFRLYDLDKDDKISRDELLQV-LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV- |
...L.F..RLY...KDDK.S.D.LLQ..L.M.VGV.ISD.QLG...DRTIQEA.Q.GD............ | |
Retrocopy | RKNLYFVLRLYNMNKDDKLSFDKLLQI<LQMTVGVEISDGQLGIVTDRTIQEAAQAGDTDKFL*NLLRI< |
Parental | LEKVDVEQ |
L.KV.VEQ | |
Retrocopy | L*KVGVEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 107 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 72 .47 RPM |
SRP007412_heart | 0 .00 RPM | 68 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 111 .34 RPM |
SRP007412_liver | 0 .00 RPM | 243 .29 RPM |
SRP007412_testis | 0 .00 RPM | 16 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009525 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010577 | 2 retrocopies | |
Homo sapiens | ENSG00000187446 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007312 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017092 | 2 retrocopies | |
Mus musculus | ENSMUSG00000014077 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003465 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000005419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006370 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006942 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004742 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014503 | 1 retrocopy |