RetrogeneDB ID: | retro_cfam_847 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 19:20042449..20043089(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSCAFG00000001318 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein L10a (RPL10A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252145] |
Percent Identity: | 75.58 % |
Parental protein coverage: | 99.08 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | SSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRP-KFSVCVLGD |
SSKVSR.TLY.A..E.LH.NQ.....F....ELQ....NYDPQKDK.F..T.RL.S.P.P.KFS.CVLGD | |
Retrocopy | SSKVSRNTLYKAMWEALHRNQHSAGSFW*-LELQMIWRNYDPQKDKCFTDTIRL*SLPAP<KFSLCVLGD |
Parental | QQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLAS-ESLIKQIPRILGPGLNKAGKFPSLLT |
.QHCDEAKAVDIPHMDIE.L.K.NKNK.L.KKLA.KYDAF.AS..SLIKQI..ILGPGLNKAGKFPS.LT | |
Retrocopy | *QHCDEAKAVDIPHMDIESLNKFNKNKNLAKKLANKYDAF*AS<KSLIKQISQILGPGLNKAGKFPSFLT |
Parental | HNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKST |
HNENMVAKVDEVKSTIKFQMK..LCLAVAVGH..M.DDELV..IHL.V.FLVS.LKKNWQNV.ALYIKST | |
Retrocopy | HNENMVAKVDEVKSTIKFQMKNMLCLAVAVGHIEMADDELV*HIHLTVKFLVSMLKKNWQNVQALYIKST |
Parental | MGKPQRL |
M.KPQRL | |
Retrocopy | MSKPQRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 184 .84 RPM |
SRP017611_brain | 0 .00 RPM | 44 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 438 .62 RPM |
SRP017611_liver | 0 .00 RPM | 194 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001318 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000000080 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018085 | 13 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002763 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023366 | 3 retrocopies |