RetrogeneDB ID: | retro_mluc_1526 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429855:3222575..3223103(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSMLUG00000000080 | ||
Aliases: | None | ||
Description: | Ribosomal protein [Source:UniProtKB/TrEMBL;Acc:G1NSH0] |
Percent Identity: | 80.98 % |
Parental protein coverage: | 83.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KVSRDTLYEAVRE-VLHGNQRKRRKFLETVELQVSLKNYDPQK-DKRFSGTVRLKSTPRPKFSVCVLGDQ |
KVS.D.LY..V.E.VLH.NQRKRRKF.ETVELQ..LKNYDPQ..DK.FSGT.RLKSTPRPKFS.CVLGDQ | |
Retrocopy | KVSHDPLY*VVWE<VLHRNQRKRRKFMETVELQIGLKNYDPQG<DKCFSGTIRLKSTPRPKFSMCVLGDQ |
Parental | QHCDEAKAMDIPHMDMEALKKLNKNKKLVKKLGRKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHN |
QHCDEAKA..IPHMD.EALKKL.KNKKLV.....KYDAFLASESLIKQIP.ILG.GLNKAGKF.SLLTHN | |
Retrocopy | QHCDEAKAVEIPHMDIEALKKLSKNKKLV----KKYDAFLASESLIKQIP*ILGLGLNKAGKFLSLLTHN |
Parental | ENMVARVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDEL-VYNIH |
ENMVA...EVKS.IKFQMK.VLCLAVAVGHVKMT.DE..VYNIH | |
Retrocopy | ENMVAKAEEVKSAIKFQMKGVLCLAVAVGHVKMTGDEM<VYNIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001318 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000000080 | 10 retrocopies |
retro_mluc_1053, retro_mluc_1526 , retro_mluc_1611, retro_mluc_1815, retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751, retro_mluc_902, retro_mluc_918,
|
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018085 | 13 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002763 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023366 | 3 retrocopies |