RetrogeneDB ID: | retro_itri_524 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393298.1:18389128..18389423(+) | ||
Located in intron of: | ENSSTOG00000001044 | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000027501 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSSTOG00000023366 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 88.46 % |
Parental protein coverage: | 63.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKD-KRFSGTVRLKSTP-RPKFSVCVLG |
SSKVS.DTLYEAVREVLHGN....RKFLE.VELQISLKNYDPQKD..RFSGT.RLKSTP.RPKFSVCVLG | |
Retrocopy | SSKVSGDTLYEAVREVLHGNH---RKFLEMVELQISLKNYDPQKD<QRFSGTARLKSTP<RPKFSVCVLG |
Parental | DQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKL |
DQ.HCDEAKAVDIPHMD.EALKKLNKNKKLVKKL | |
Retrocopy | DQRHCDEAKAVDIPHMDMEALKKLNKNKKLVKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001318 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000000080 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018085 | 13 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002763 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023366 | 3 retrocopies |
retro_itri_1097, retro_itri_524 , retro_itri_847,
|