RetrogeneDB ID: | retro_mluc_1815 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429917:582246..582847(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSMLUG00000000080 | ||
Aliases: | None | ||
Description: | Ribosomal protein [Source:UniProtKB/TrEMBL;Acc:G1NSH0] |
Percent Identity: | 70.73 % |
Parental protein coverage: | 92.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | VLHGNQRKRRKFLETVELQVSLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAK-AMDI-PH |
VLHGNQRK..KF.....LQ.SLKNY.PQKDK.FSGT..L.S.P.PK.SVCV.G.QQHC..A..AMDI.PH | |
Retrocopy | VLHGNQRKLWKFSGH*GLQISLKNYEPQKDKHFSGTIWLRSIPHPKSSVCVPGEQQHCKGAR<AMDI<PH |
Parental | MDMEALKKLNKNKKLVKKLGRKYDAFLASESLIKQIP-RILGPGLNKAGKFPSLLTHNENMVA-RVDEVK |
MD.E.LKKLNKNKKL.KKL..KYD.FL.SESLI.QIP...LGP.LN......SLLTHN.NMVA......K | |
Retrocopy | MDIEVLKKLNKNKKLDKKLAKKYDDFLVSESLINQIP>EFLGPDLNNLCMLSSLLTHNRNMVA<QLNGIK |
Parental | STIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY |
STI.FQMKKVL..AVA.GHVKMTDDELVYNIH..VNFLVSLLKKN.QNV.ALYIK.TMGK.Q.L. | |
Retrocopy | STITFQMKKVLYQAVAIGHVKMTDDELVYNIHIVVNFLVSLLKKN*QNVQALYIKNTMGKAQQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001318 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000000080 | 10 retrocopies |
retro_mluc_1053, retro_mluc_1526, retro_mluc_1611, retro_mluc_1815 , retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751, retro_mluc_902, retro_mluc_918,
|
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018085 | 13 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002763 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023366 | 3 retrocopies |