RetrogeneDB ID: | retro_mluc_751 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429774:10688291..10688794(+) | ||
Located in intron of: | ENSMLUG00000017485 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSMLUG00000000080 | ||
Aliases: | None | ||
Description: | Ribosomal protein [Source:UniProtKB/TrEMBL;Acc:G1NSH0] |
Percent Identity: | 69.01 % |
Parental protein coverage: | 76.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GTVRLKSTPRPKFSVCVLGDQQHCDEAKAMDIPHMDMEA-LKKLNKNKKLVKKLGRKYDAFLASES-LIK |
G..RL.STP.PKFSVCVLGDQQHCD.AKA.DIP.MD..A..KKLNK.KKLVKKL...Y..FLASES.L.K | |
Retrocopy | GYLRLNSTPHPKFSVCVLGDQQHCDKAKAVDIPDMDIKA<MKKLNKSKKLVKKLAKQYNDFLASES>LVK |
Parental | QIPRILGPGLNKAGKFPSLLTHNENMVARVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDE-LVYNIHLAV |
.IPRIL.PGL...GKFPSLLTHNE...A.V.EVKSTI........CLAVA.GHVKMTDD..LVYN....V | |
Retrocopy | RIPRILDPGLSESGKFPSLLTHNESTAAEVNEVKSTISSR*RGGVCLAVALGHVKMTDDDKLVYNSYFTV |
Parental | NFLVSLLKKNWQNVR-ALYIKSTMGKPQRLY |
NFL.SLLKKNW.N.R.AL..KS..GKPQ.LY | |
Retrocopy | NFLMSLLKKNWKNIR<ALHTKSILGKPQCLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001318 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000000080 | 10 retrocopies |
retro_mluc_1053, retro_mluc_1526, retro_mluc_1611, retro_mluc_1815, retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751 , retro_mluc_902, retro_mluc_918,
|
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018085 | 13 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002763 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023366 | 3 retrocopies |