RetrogeneDB ID: | retro_itri_1097 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393375.1:1831266..1831513(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSSTOG00000023366 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 56.32 % |
Parental protein coverage: | 51.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RSSKVSRDTLYEAVRE-VLHGNQRKRRKFLETVELQI-SLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVL |
.S..V..D.L.E.....VL.GNQ.K..KFLE.V.LQ...LKN.DPQKDK....T...KST..PKFS.CVL | |
Retrocopy | KSNRVFLDPL*EVAQK<VLFGNQHKYQKFLEMVGLQT>NLKNSDPQKDKCSWVTRWPKSTLCPKFSMCVL |
Parental | GD-QQH-CDEAKAVDIP |
G..QQH.CDEA..VD.P | |
Retrocopy | GP<QQH<CDEAQTVDSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001318 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000000080 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018085 | 13 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002763 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023366 | 3 retrocopies |
retro_itri_1097 , retro_itri_524, retro_itri_847,
|