RetrogeneDB ID:

retro_chof_518

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_117012:2513..2849(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000010742
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_518
ATGGCCAATGTGGATGACAGTGAGGAGTCTGGCACTCTGTCCTCTTACTACGGGAGCCAGGCTGCGAGTCGGGGAGCAAC
TAAATGTTCTCCCTCAAGAAGTGGAACGCAGTGGCCGGGGAGCTGGGACGTGGAGTGTGATATGTGCTCCATTTGCAGGG
TCCAGGTGATAGATGCCTGTCTCAGATGCCAAGCTGAAAACAAACAAGGGGATTGTGTTGTGGTCTGGGGAGAATGTAAT
TATTCCTTTCACAATTGCTGCATGTCCCTGTGGGTAAAACATAATAATCGCTGTGCACTCTGCCAGCAGGACAGGGTCGT
CCAAATAATTGGCAAA

ORF - retro_chof_518 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.83 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADVEDGEESGTLSSHSGSAGSKSGSDKMFSLKKWNAVAMW--SWDVECDTCAICRVQVMDACLRCQAEN
MA.V.D.EESGTL...S...GS...S..............W..SWDVECD.C.ICRVQV.DACLRCQAEN
RetrocopyMANVDDSEESGTL---SSYYGSQAASRGATKCSPSRSGTQWPGSWDVECDMCSICRVQVIDACLRCQAEN
ParentalKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
KQ.DCVVVWGECN.SFHNCCMSLWVK.NNRC.LCQQD.VVQ.IGK
RetrocopyKQGDCVVVWGECNYSFHNCCMSLWVKHNNRCALCQQDRVVQIIGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_518 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 40 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000076941 retrocopy
Choloepus hoffmanni ENSCHOG00000010742 3 retrocopies
retro_chof_2513, retro_chof_45, retro_chof_518 ,
Callithrix jacchus ENSCJAG000000019912 retrocopies
Dasypus novemcinctus ENSDNOG000000059613 retrocopies
Homo sapiens ENSG000001141251 retrocopy
Gorilla gorilla ENSGGOG000000018291 retrocopy
Microcebus murinus ENSMICG000000013531 retrocopy
Macaca mulatta ENSMMUG000000066482 retrocopies
Monodelphis domestica ENSMODG000000212321 retrocopy
Mus musculus ENSMUSG000000512343 retrocopies
Nomascus leucogenys ENSNLEG000000046463 retrocopies
Otolemur garnettii ENSOGAG000000086591 retrocopy
Pongo abelii ENSPPYG000000141672 retrocopies
Pan troglodytes ENSPTRG000000392481 retrocopy
Rattus norvegicus ENSRNOG000000116635 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000149643 retrocopies
Tupaia belangeri ENSTBEG000000029172 retrocopies
Tarsius syrichta ENSTSYG000000077785 retrocopies



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