RetrogeneDB ID: | retro_hsap_2790 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:57505398..57505737(-) | ||
Located in intron of: | ENSG00000174844 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000239831 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF7 | ||
Ensembl ID: | ENSG00000114125 | ||
Aliases: | None | ||
Description: | ring finger protein 7 [Source:HGNC Symbol;Acc:10070] |
Percent Identity: | 88.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQ |
MADVEDGEE..AL.SHS.S.GSKSGGDKMF.LKKWN.VAMWSW.VE.D.CAICRVQVMDACLRCQAENKQ | |
Retrocopy | MADVEDGEEPYALTSHSRSAGSKSGGDKMF*LKKWNVVAMWSWAVE*DMCAICRVQVMDACLRCQAENKQ |
Parental | EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK |
EDCVVV.GECNHSF.NCCMSLWVKQNNRCPLCQQDWV.QRIGK | |
Retrocopy | EDCVVVLGECNHSFRNCCMSLWVKQNNRCPLCQQDWVAQRIGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 36 .18 RPM |
bodymap2_adrenal | 0 .02 RPM | 48 .31 RPM |
bodymap2_brain | 0 .02 RPM | 23 .35 RPM |
bodymap2_breast | 0 .00 RPM | 36 .48 RPM |
bodymap2_colon | 0 .00 RPM | 54 .88 RPM |
bodymap2_heart | 0 .00 RPM | 30 .79 RPM |
bodymap2_kidney | 0 .00 RPM | 44 .19 RPM |
bodymap2_liver | 0 .00 RPM | 24 .16 RPM |
bodymap2_lung | 0 .25 RPM | 42 .76 RPM |
bodymap2_lymph_node | 0 .00 RPM | 41 .43 RPM |
bodymap2_ovary | 0 .15 RPM | 46 .75 RPM |
bodymap2_prostate | 0 .03 RPM | 59 .48 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .66 RPM |
bodymap2_testis | 0 .00 RPM | 56 .07 RPM |
bodymap2_thyroid | 0 .00 RPM | 62 .60 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 45 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2228 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007694 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010742 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000001991 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005961 | 3 retrocopies | |
Homo sapiens | ENSG00000100387 | 1 retrocopy | |
Homo sapiens | ENSG00000114125 | 1 retrocopy |
retro_hsap_2790 ,
|
Gorilla gorilla | ENSGGOG00000001829 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001353 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006648 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000021232 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051234 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004646 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000008659 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014167 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000039248 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011663 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014964 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000002917 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000007778 | 5 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |