RetrogeneDB ID:

retro_ptro_51

Retrocopy
location
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:24870059..24870401(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSPTRG00000015473
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF7
Ensembl ID:ENSPTRG00000039248
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ptro_51
ATGGCCGACGTGGAAGACGGAGAGGAAACCTGCGCCCTGGCCTCTCACTCCGGGAGCTCAGGCTCCAAGTCGGGAGGCGA
CAAGATGTTCTCCCTCAAGAAGTGGAACGCGGTGGCCATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCCATCTGCA
GGGTCCAGGTGATGGATGCCTGTCTTAGATGTCAAGCTGAAAACAAACAAGAGGACTGTGTTGTGGTCTGGGGAGAATGT
AATCATTCCTTCCACAACTGCTGCATGTCCCTGTGGGTGAAACAGAACAATCGCTGCCCTCTCTGCCAGCAGGACTGGGT
GGTCCAAAGAATCGGCAAATGA

ORF - retro_ptro_51 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQ
MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQ
RetrocopyMADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQ
ParentalEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
RetrocopyEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .45 RPM 4 .79 RPM
SRP007412_cerebellum 0 .11 RPM 1 .43 RPM
SRP007412_heart 0 .00 RPM 1 .54 RPM
SRP007412_kidney 0 .21 RPM 2 .72 RPM
SRP007412_liver 0 .23 RPM 1 .87 RPM
SRP007412_testis 0 .11 RPM 1 .26 RPM
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_51 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_51 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ptro_51 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 19 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000076941 retrocopy
Choloepus hoffmanni ENSCHOG000000107423 retrocopies
Callithrix jacchus ENSCJAG000000019912 retrocopies
Dasypus novemcinctus ENSDNOG000000059613 retrocopies
Homo sapiens ENSG000001141251 retrocopy
Gorilla gorilla ENSGGOG000000018291 retrocopy
Microcebus murinus ENSMICG000000013531 retrocopy
Macaca mulatta ENSMMUG000000066482 retrocopies
Monodelphis domestica ENSMODG000000212321 retrocopy
Mus musculus ENSMUSG000000512343 retrocopies
Nomascus leucogenys ENSNLEG000000046463 retrocopies
Otolemur garnettii ENSOGAG000000086591 retrocopy
Pongo abelii ENSPPYG000000141672 retrocopies
Pan troglodytes ENSPTRG000000144171 retrocopy
Pan troglodytes ENSPTRG00000039248 1 retrocopy
retro_ptro_51 ,
Rattus norvegicus ENSRNOG000000116635 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000149643 retrocopies
Tupaia belangeri ENSTBEG000000029172 retrocopies
Tarsius syrichta ENSTSYG000000077785 retrocopies



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