RetrogeneDB ID:

retro_nleu_687

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397269.1:45885624..45885963(-)
Located in intron of:ENSNLEG00000007264
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF7
Ensembl ID:ENSNLEG00000004646
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_687
ATGGCCGACGTGGAAGACGGTGAGGAACCCTACGCCCTGACCTCTCACTCCAGGAGCGCAGGCTCCAAGTCGGGAGGCGA
CAAGATGTTCTAGCTCAAGAAGTGGAACGTGGTGGCCATGTGGAGCTGGGACATGGAGTGCGATACGTGCTCCATCTGCA
GAGTCCAGGTGATGGATGCCTGTCTCAGATGTCAAGCTGAAAACAAACAAGAGGACTGTGTTGTGGTCTTGGGAGAATGT
AATCATTCCTTCCGCAACTGCTGCATGTCCCTGTGGATGAAACAGAACAATCGCTGCCCTCTCTGCCAGCAGGACTGGAT
GGCCCAAAGAATCGGCAAA

ORF - retro_nleu_687 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.61 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQ
MADVEDGEE..AL.SHS.S.GSKSGGDKMF.LKKWN.VAMWSWD.ECDTC.ICRVQVMDACLRCQAENKQ
RetrocopyMADVEDGEEPYALTSHSRSAGSKSGGDKMF*LKKWNVVAMWSWDMECDTCSICRVQVMDACLRCQAENKQ
ParentalEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
EDCVVV.GECNHSF.NCCMSLW.KQNNRCPLCQQDW..QRIGK
RetrocopyEDCVVVLGECNHSFRNCCMSLWMKQNNRCPLCQQDWMAQRIGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_687 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000076941 retrocopy
Choloepus hoffmanni ENSCHOG000000107423 retrocopies
Callithrix jacchus ENSCJAG000000019912 retrocopies
Dasypus novemcinctus ENSDNOG000000059613 retrocopies
Homo sapiens ENSG000001141251 retrocopy
Gorilla gorilla ENSGGOG000000018291 retrocopy
Microcebus murinus ENSMICG000000013531 retrocopy
Macaca mulatta ENSMMUG000000066482 retrocopies
Monodelphis domestica ENSMODG000000212321 retrocopy
Mus musculus ENSMUSG000000512343 retrocopies
Nomascus leucogenys ENSNLEG00000004646 3 retrocopies
retro_nleu_2038, retro_nleu_2972, retro_nleu_687 ,
Nomascus leucogenys ENSNLEG000000154361 retrocopy
Otolemur garnettii ENSOGAG000000086591 retrocopy
Pongo abelii ENSPPYG000000141672 retrocopies
Pan troglodytes ENSPTRG000000392481 retrocopy
Rattus norvegicus ENSRNOG000000116635 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000149643 retrocopies
Tupaia belangeri ENSTBEG000000029172 retrocopies
Tarsius syrichta ENSTSYG000000077785 retrocopies



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