RetrogeneDB ID:

retro_mmul_1440

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:2:78868696..78869032(+)
Located in intron of:ENSMMUG00000004881
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF7
Ensembl ID:ENSMMUG00000006648
Aliases:None
Description:RING-box protein 2 [Source:RefSeq peptide;Acc:NP_001253405]


Retrocopy-Parental alignment summary:






>retro_mmul_1440
GCAGACGTGGAAGACGGCGAGGAACCCTACGCTCTGACCTCTCAGTCCAGGAGCGCAGGCTCCAAGTCGGGGGGCGACAA
GATGTTCTAGCTCAAGAAGTGGAACGCGGTGGCCGTGTGGAGCTGGGACGGGGAGTGTGTTACGTGCGCCATTTGCAGAG
TCCAGGTGATGGATGCCTATCTCAGATGTCAAGCTGAAAACAAACAAGAGGACTGTGTTGTGGTCGTGGGAGAATGTAAT
CATTCCTTCCGCAACTGCTGCATGTCCCTGTGGGTGAAACAGAGCAATCGCTGCCCTCTCTGCCAGCAGGACTGGGTGGC
CCAAAGAATCAGCAGA

ORF - retro_mmul_1440 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.82 %
Parental protein coverage: 99.12 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQE
ADVEDGEE..AL.S.S.S.GSKSGGDKMF.LKKWNAVA.WSWD.EC.TCAICRVQVMDA.LRCQAENKQE
RetrocopyADVEDGEEPYALTSQSRSAGSKSGGDKMF*LKKWNAVAVWSWDGECVTCAICRVQVMDAYLRCQAENKQE
ParentalDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
DCVVV.GECNHSF.NCCMSLWVKQ.NRCPLCQQDWV.QRI..
RetrocopyDCVVVVGECNHSFRNCCMSLWVKQSNRCPLCQQDWVAQRISR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 9 .52 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 19 .28 RPM
SRP007412_cerebellum 0 .00 RPM 15 .30 RPM
SRP007412_heart 0 .06 RPM 10 .54 RPM
SRP007412_kidney 0 .00 RPM 9 .39 RPM
SRP007412_liver 0 .00 RPM 7 .16 RPM
SRP007412_testis 0 .30 RPM 19 .94 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1440 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1440 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_1440 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Gorilla gorilla retro_ggor_1942

Parental genes homology:
Parental genes homology involve 19 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000076941 retrocopy
Choloepus hoffmanni ENSCHOG000000107423 retrocopies
Callithrix jacchus ENSCJAG000000019912 retrocopies
Dasypus novemcinctus ENSDNOG000000059613 retrocopies
Homo sapiens ENSG000001141251 retrocopy
Gorilla gorilla ENSGGOG000000018291 retrocopy
Microcebus murinus ENSMICG000000013531 retrocopy
Macaca mulatta ENSMMUG00000006648 2 retrocopies
retro_mmul_1223, retro_mmul_1440 ,
Macaca mulatta ENSMMUG000000126423 retrocopies
Monodelphis domestica ENSMODG000000212321 retrocopy
Mus musculus ENSMUSG000000512343 retrocopies
Nomascus leucogenys ENSNLEG000000046463 retrocopies
Otolemur garnettii ENSOGAG000000086591 retrocopy
Pongo abelii ENSPPYG000000141672 retrocopies
Pan troglodytes ENSPTRG000000392481 retrocopy
Rattus norvegicus ENSRNOG000000116635 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000149643 retrocopies
Tupaia belangeri ENSTBEG000000029172 retrocopies
Tarsius syrichta ENSTSYG000000077785 retrocopies



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