RetrogeneDB ID: | retro_cpor_102 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_12:47311667..47312921(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000010642 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGK1 | ||
Ensembl ID: | ENSCPOG00000023785 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSNKLTLDKLEVKGKRVVMRVDFNVPMKNNQITNNQSRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDG |
MSLS.KLTLDKL.VKGKRV.MRVDFNVPMKNNQITNNQ.RIKAAVPSIK.CLD.GAK.VVLMSHLGRPDG | |
Retrocopy | MSLSKKLTLDKLDVKGKRVIMRVDFNVPMKNNQITNNQ-RIKAAVPSIKYCLDHGAKCVVLMSHLGRPDG |
Parental | VAMPDKYSLQPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAVGSVILLENLRFHVEEEGKGKDASGNK |
VAMPDKYSL.PVA.ELK.LLGKDVLFLKDCVGPEVEK.CA.PA.GSVILLENLRFHVEEEGKG.D.SG.K | |
Retrocopy | VAMPDKYSLEPVAAELKALLGKDVLFLKDCVGPEVEKTCANPATGSVILLENLRFHVEEEGKGQDPSGTK |
Parental | VKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALENPERPFL |
.KAEP.KIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKA.GFLMKKEL.YFAKALENPERPFL | |
Retrocopy | LKAEPDKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELEYFAKALENPERPFL |
Parental | AILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVK |
AILGGAKVADKIQLI.NMLDKVN.MIIGGGMA.TFLKVLNNMEIG.SLFDEEGAKIVKD.M.KA.KNGVK | |
Retrocopy | AILGGAKVADKIQLIKNMLDKVNHMIIGGGMAYTFLKVLNNMEIGASLFDEEGAKIVKDIMDKANKNGVK |
Parental | ITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSRKYAEAVGRAKQIVWNGPVGVFEWEAFA |
IT.PVDFVTADKFDENAK.G.ATV.SGIPAGWMGLDCGPES..K.A..V...K.IVWNGPVGVFEW.AFA | |
Retrocopy | ITFPVDFVTADKFDENAKVGKATVESGIPAGWMGLDCGPESNKKFAQIVAQSKLIVWNGPVGVFEWDAFA |
Parental | QGTKTLMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV |
.GTK.LMDEVVKATS.GC.TIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGK.LPGV.ALSN. | |
Retrocopy | AGTKALMDEVVKATSKGCVTIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVEALSNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 248 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 144 .78 RPM |
SRP017611_liver | 0 .00 RPM | 125 .92 RPM |
SRP040447_lung | 0 .00 RPM | 124 .41 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 548 .00 RPM |