RetrogeneDB ID: | retro_sara_14 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_185545:4590..5844(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000011666 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGK1 | ||
Ensembl ID: | ENSSARG00000003956 | ||
Aliases: | None | ||
Description: | phosphoglycerate kinase 1 [Source:HGNC Symbol;Acc:8896] |
Percent Identity: | 82.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VDFNVPMKNNKITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAGELKSLLGKD |
VD.NVPM..N.ITNNQRI.A..PSI..CLDNGAKSVVLMSHLGRPDGVPMP.KYSLEPVA.ELKSLLGKD | |
Retrocopy | VDYNVPMNKNQITNNQRIRASLPSIRYCLDNGAKSVVLMSHLGRPDGVPMPEKYSLEPVAAELKSLLGKD |
Parental | VLFLKDCVGPEVEKVCADPAAGSVILLENLRFHVEEEGKGKDASGNKIKAEPAKVEAFRASLSKLGDVYV |
VLFLKDCVG.EVE..CA.PA.GSVILLENLRFHVEEEGKGKD..GNKIKA.P....AFR.SLSKLGD.YV | |
Retrocopy | VLFLKDCVGKEVEQTCANPADGSVILLENLRFHVEEEGKGKDSAGNKIKAGPDEIKAFRDSLSKLGDTYV |
Parental | NDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPEKPFLAILGGAKVADKIQLINNMLDKVN |
NDAFGTAHRAHSSMVGVNLPQKA.GFLMKKEL.YFAKALE.P.KPFLAILGGAKVADKIQLI.NMLDKVN | |
Retrocopy | NDAFGTAHRAHSSMVGVNLPQKASGFLMKKELEYFAKALENPQKPFLAILGGAKVADKIQLIKNMLDKVN |
Parental | EMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVRITLPVDFVIADKFDENAKTGQAL |
EMIIGGGMA.TFLKVL.NMEIG.SLFDEEGAKIV.D.M..A..NGV.IT.PVDF..A.KF.E.A..G.A. | |
Retrocopy | EMIIGGGMAYTFLKVLKNMEIGDSLFDEEGAKIVEDIMTTAKTNGVNITFPVDFITANKFAEDATVGKAT |
Parental | VASGIPADWMGLDCGPESSKKYAEAVGRAKQIVWNGPVGVFEWEAFSRGTKALMDEVVKATSRGCITIIG |
VASGIP..WMGLDCGP...KK.AE.V.RAK.IVWNGPVGVFEW.AF..GTK.LMDE.VKAT..GCITIIG | |
Retrocopy | VASGIPSGWMGLDCGPKTNKKCAEVVARAKLIVWNGPVGVFEWDAFAKGTKSLMDEIVKATAKGCITIIG |
Parental | GGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV |
GGDTA.CC.KW.TEDKVSHVSTGGGASLELLEGKVLPGV.ALSN. | |
Retrocopy | GGDTASCCEKWKTEDKVSHVSTGGGASLELLEGKVLPGVEALSNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |