RetrogeneDB ID: | retro_rnor_1527 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:123078332..123079182(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pgk1 | ||
Ensembl ID: | ENSRNOG00000002467 | ||
Aliases: | Pgk1, Pgk | ||
Description: | Phosphoglycerate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P16617] |
Percent Identity: | 78.32 % |
Parental protein coverage: | 67.87 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKF-CLDNGAKSVVLMSHLGRPDG |
M.LSNKL.L.KLD.KGK..VMR.DFNVPMKNN.ITNN.R.K..VPSIKF.C.DN.AKSVVLM..LG..DG | |
Retrocopy | MLLSNKLSLNKLDIKGKHIVMRLDFNVPMKNNKITNN*RMKDTVPSIKF>CMDNEAKSVVLMNNLGKSDG |
Parental | VPMPDKYSLEPVAAELKSLLGKDVLFLKDCVGSEVENACANPAAGTVILLENLRFHVEEEGKGKDASGNK |
VP.PDKYSLEPVAAE.KSLLGKDVLFLKDCVG.EVENACANPAAG.VILLENLRFHVE.EGK...ASGNK | |
Retrocopy | VPVPDKYSLEPVAAEFKSLLGKDVLFLKDCVGPEVENACANPAAGIVILLENLRFHVEKEGKRNNASGNK |
Parental | VKAEPAKIDAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMK-KELNYFAKALESPERPF |
VKAEPAKIDA..ASLSKLGDVYVND.FG..H..H.SMV.VNLPQKA.GFLMK..ELNYFAKAL.SPE..F | |
Retrocopy | VKAEPAKIDAS*ASLSKLGDVYVNDSFGSTH*VHGSMVCVNLPQKASGFLMK<VELNYFAKALDSPEQHF |
Parental | LAILGGAKVADKIQLINNMLDKVNEMIIGG-GMAFTFLKVLNNMEIGTSLYDEEGAKIVKDLMAKAEKNG |
LAI..G.K..DK..LINNMLDKVNEMIIGG..MAFTFLKVL.NMEI.TSLYD.E.AKIVKDLM...EKN. | |
Retrocopy | LAIFRGGKIVDKF*LINNMLDKVNEMIIGG>*MAFTFLKVLKNMEISTSLYDDERAKIVKDLMSDSEKNT |
Parental | VKITLP |
V...LP | |
Retrocopy | VNTILP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 322 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 446 .19 RPM |
SRP017611_liver | 0 .00 RPM | 184 .97 RPM |