Parental gene:

PGK1, ENSSSCG00000012440

Aliases:None
Description:Sus scrofa phosphoglycerate kinase 1 (PGK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099932]
Organism:Pig (Sus scrofa)
Coordinates:X:71339753..71352751(-)


>ENSSSCG00000012440
GATGTTAAAGGAAGTTCAGTAATTTTTAGGTTAAACTATAATTTAGCCATGAATAAAATAGTTCCCACTAATTCTCAGGA
GATCAAGGCTGCCATCCCAAGCATCAAATTCTGCCTAGACAACGGAGCCAAGTCAGTTGTTCTTATGAGCCACCTAGGCC
GGCCTGATGGTATCCCTATGCCTGACAAGTACTCCTTGGAGCCAGTTGCTGTAGAACTCAAATCTCTGCTGGGCAAGGAT
GTTTTGTTCTTGAAGGACTGCGTGGGCCCAGAAGTGGAGAAAGCTTGTGCTGACCCAGCTGCTGGTTCTGTCATCCTGTT
GGAGAACCTTCGCTTTCATGTGGAGGAAGAAGGGAAGGGAAAAGATGCTTCTGGGAGCAAGGTTAAAGCTGATCCAGCCA
AAATAGAAGCCTTCCGAGCTTCACTTTCCAAGCTAGGGGATGTCTATGTCAATGATGCTTTTGGTACTGCTCACCGAGCT
CACAGCTCCATGGTGGGAGTAAATCTGCCAAAGAAGGCTGGAGGTTTTTTGATGAAGAAGGAGCTGAACTACTTTGCCAA
GGCCTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCGGAGCTAAAGTTGCAGACAAGATCCAGCTAATCAATA
ATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCCTTTACCTTCCTTAAGGTGCTCAACAACATGGAG
ATTGGCACTTCTCTTTTTGATGAAGAGGGATCCAAGATCGTCAAAGATCTGATGTCCAAAGCTGAGAAGAATGGTGTGAA
GATTACTTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGCCAAGATTGGCCAAGCCACTGTGGCCTCTG
GTATACCTGCTGGGTGGATGGGCTTGGACTGTGGTCCTGAGAGCAGCAAGAAGTATAGTGAGGCTGTTGCTCGGGCTAAG
CAGATTGTATGGAATGGACCTGTGGGCGTATTTGAATGGGAAGCTTTTGCCCAAGGAACCAAAGCCCTCATGGATGAGGT
GGTGAAAGCCACTTCCAGGGGCTGCATCACCATCATAGGTGGTGGAGACACTGCTACCTGCTGTGCCAAATGGAACACGG
AGGATAAAGTCAGCCATGTGAGCACTGGGGGTGGTGCCAGTTTAGAGCTCCTGGAAGGTAAAGTCCTTCCTGGGGTGGAT
GCTCTCAGTAATGTTTAG

Library Parental gene expression (RPM)
SRP014902_placenta 203 .34 RPM
SRP014902_testis 75 .53 RPM
SRP018288_heart 144 .17 RPM
SRP018288_kidney 160 .76 RPM
SRP018288_liver 146 .16 RPM
SRP018288_lung 54 .78 RPM
SRP018856_adipose 263 .60 RPM
SRP035408_brain 158 .68 RPM
SRP035408_liver 101 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017619 ortholog_one2one 1 retrogene
retro_amel_117,
Bos taurus ENSBTAG00000000894 ortholog_one2one 1 retrogene
retro_btau_1021,
Canis familiaris ENSCAFG00000017270 ortholog_one2one 2 retrogenes
retro_cfam_1194, retro_cfam_510,
Callithrix jacchus ENSCJAG00000021082 ortholog_many2many 3 retrogenes
retro_cjac_1367, retro_cjac_137, retro_cjac_4171,
Cavia porcellus ENSCPOG00000023785 ortholog_one2many 1 retrogene
retro_cpor_102,
Equus caballus ENSECAG00000014984 ortholog_one2one 1 retrogene
retro_ecab_557,
Felis catus ENSFCAG00000013209 ortholog_one2many 2 retrogenes
retro_fcat_123, retro_fcat_316,
Homo sapiens ENSG00000102144 ortholog_one2many 2 retrogenes
retro_hsap_1966, retro_hsap_90,
Gorilla gorilla ENSGGOG00000017111 ortholog_one2many 3 retrogenes
retro_ggor_1429, retro_ggor_2420, retro_ggor_3026,
Loxodonta africana ENSLAFG00000011954 ortholog_one2many 1 retrogene
retro_lafr_13,
Macropus eugenii ENSMEUG00000004779 ortholog_one2many 3 retrogenes
retro_meug_11, retro_meug_1649, retro_meug_400,
Myotis lucifugus ENSMLUG00000017791 ortholog_one2one 2 retrogenes
retro_mluc_1657, retro_mluc_2159,
Macaca mulatta ENSMMUG00000012874 ortholog_many2many 1 retrogene
retro_mmul_144,
Monodelphis domestica ENSMODG00000004055 ortholog_many2many 2 retrogenes
retro_mdom_140, retro_mdom_170,
Mus musculus ENSMUSG00000062070 ortholog_many2many 2 retrogenes
retro_mmus_29, retro_mmus_9,
Nomascus leucogenys ENSNLEG00000001423 ortholog_one2many 3 retrogenes
retro_nleu_2372, retro_nleu_2610, retro_nleu_79,
Oryctolagus cuniculus ENSOCUG00000014726 ortholog_many2many 1 retrogene
retro_ocun_171,
Otolemur garnettii ENSOGAG00000011104 ortholog_one2many 1 retrogene
retro_ogar_73,
Procavia capensis ENSPCAG00000002117 ortholog_one2many 1 retrogene
retro_pcap_17,
Pongo abelii ENSPPYG00000020496 ortholog_one2many 3 retrogenes
retro_pabe_134, retro_pabe_1624, retro_pabe_3770,
Pan troglodytes ENSPTRG00000022052 ortholog_one2many 2 retrogenes
retro_ptro_2, retro_ptro_3229,
Rattus norvegicus ENSRNOG00000002467 ortholog_many2many 7 retrogenes
retro_rnor_1526, retro_rnor_1527, retro_rnor_2603, retro_rnor_3, retro_rnor_462, retro_rnor_590, retro_rnor_611,
Sorex araneus ENSSARG00000003956 ortholog_one2one 1 retrogene
retro_sara_14,
Sarcophilus harrisii ENSSHAG00000001853 ortholog_many2many 1 retrogene
retro_shar_11,
Ictidomys tridecemlineatus ENSSTOG00000001972 ortholog_many2many 1 retrogene
retro_itri_65,
Tupaia belangeri ENSTBEG00000010309 ortholog_one2many 1 retrogene
retro_tbel_35,
Tarsius syrichta ENSTSYG00000007917 ortholog_one2many 1 retrogene
retro_tsyr_40,
Vicugna pacos ENSVPAG00000001208 ortholog_one2one 1 retrogene
retro_vpac_21,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_933 83.21 100.00
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Download FASTA sequences of all ENSSSCG00000012440 retrocopies