RetrogeneDB ID: | retro_ocun_171 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:39006460..39007714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000005270 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000014726 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDHGAKSVVLMSHLGRPDGV |
MSLS.KLTLDK.DVKGKRV.MRVD.NVPMK.NQITNNQRIKA..PSIK.CLD.GAK.V.LMSHLGRPDG. | |
Retrocopy | MSLSKKLTLDKVDVKGKRVIMRVDYNVPMKKNQITNNQRIKASIPSIKYCLDNGAKAVILMSHLGRPDGI |
Parental | PMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKV |
PMPDKYSLEPVA.ELKSLLGKDVLFLKDCVG.EVEKACANPA.GSVILLENLRFHVEEEGKG.DASG.K. | |
Retrocopy | PMPDKYSLEPVASELKSLLGKDVLFLKDCVGSEVEKACANPAPGSVILLENLRFHVEEEGKGQDASGKKL |
Parental | KAEPAKIETFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA |
KAEP..IE.FRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKA.GFLMKKEL.YFAKALE.PERPFLA | |
Retrocopy | KAEPHEIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELEYFAKALENPERPFLA |
Parental | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI |
ILGGAKVADKIQLI.NMLDKVNEMIIGGGMAFTFLKVLNNMEIG.SLFDEEGAKIVKD.M.KA.KNGVKI | |
Retrocopy | ILGGAKVADKIQLIKNMLDKVNEMIIGGGMAFTFLKVLNNMEIGASLFDEEGAKIVKDIMAKADKNGVKI |
Parental | TLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVGRAKQIVWNGPVGVFEWEAFAR |
T.PVDFVTADKFDE.A..GQATV.SGIP.GWM.LDCGPESSKK.A..V..AK.IVWNGPVGVFEW..FA. | |
Retrocopy | TFPVDFVTADKFDENANVGQATVESGIPSGWMALDCGPESSKKFAQVVAQAKLIVWNGPVGVFEWDSFAS |
Parental | GTKALMDEVVKATSRGCITIIAGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV |
GTKALMDE.VKATS.GCIT.I.GGGDTATCCAKWNTE.KVSHVSTGGGASLELLEGK.LPGV.ALSN. | |
Retrocopy | GTKALMDEIVKATSKGCITVI-GGGDTATCCAKWNTEGKVSHVSTGGGASLELLEGKILPGVEALSNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 40 .34 RPM |
SRP017611_liver | 0 .00 RPM | 11 .79 RPM |