RetrogeneDB ID: | retro_rnor_462 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:99010777..99011617(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000014406 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pgk1 | ||
Ensembl ID: | ENSRNOG00000002467 | ||
Aliases: | Pgk1, Pgk | ||
Description: | Phosphoglycerate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P16617] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 68.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGV |
M.LSN.LTLDKL.VKGK.V.MRVDFNVPMKNNQITNN.RIK.AVPSIKFCLDNGAKSVVLMSHLGRPDG. | |
Retrocopy | MLLSNMLTLDKLNVKGKQVGMRVDFNVPMKNNQITNNLRIKDAVPSIKFCLDNGAKSVVLMSHLGRPDGM |
Parental | PMPDKYSLEPVAAELKSLLGKDVLFLKDCVGSEVENACANPAAGTVILLENLRFHVEEEGKGKDASGNKV |
PMP.KYSLEPV.AELKSLLGKDVLFLKDCVGSEVENACANPAAGTVILLENL.FHVEEEGKGKD.SGNKV | |
Retrocopy | PMPNKYSLEPVPAELKSLLGKDVLFLKDCVGSEVENACANPAAGTVILLENLHFHVEEEGKGKDVSGNKV |
Parental | KAEPAKIDAFRASLSKLGDVYVN-DAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFL |
KA..AKIDAFRASLSKLGDVYV..D.FG....AH..MV.VNLPQKAGGFLMKKELNYFAKALESPERPFL | |
Retrocopy | KAGTAKIDAFRASLSKLGDVYVK<DTFGA---AH--MVDVNLPQKAGGFLMKKELNYFAKALESPERPFL |
Parental | AILGGAKVADKIQLINNMLDKVNEMIIGGGMA-FTFLKVLNNMEIGTSLYDEEGAKIVKDL-MAKAE-KN |
AILGGAKVADKIQLINNMLDKVNEMIIGGGMA.FTFLKVLNNMEIGTS.YDEEGAKIV....M.KA..KN | |
Retrocopy | AILGGAKVADKIQLINNMLDKVNEMIIGGGMA<FTFLKVLNNMEIGTSPYDEEGAKIVXXXSMSKAR<KN |
Parental | GVKITLPVD |
GVKITL.VD | |
Retrocopy | GVKITLSVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 322 .24 RPM |
SRP017611_kidney | 0 .49 RPM | 446 .19 RPM |
SRP017611_liver | 0 .34 RPM | 184 .97 RPM |