RetrogeneDB ID: | retro_mdom_140 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:414142645..414143899(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000023304 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000004055 | ||
Aliases: | None | ||
Description: | Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:F7C393] |
Percent Identity: | 94.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSNKLTLDKVDLKGKRVIMRVDFNVPMKNKEITNNQRIKAALPSINYCLDNGAKSVVLMSHLGRPDGI |
MSLSNKLTLDKVDLKGKRVIMRVDFNVPMKNKEITNNQRIKAALPSI.YCLDNGAKSVVLMSHLGRP.GI | |
Retrocopy | MSLSNKLTLDKVDLKGKRVIMRVDFNVPMKNKEITNNQRIKAALPSISYCLDNGAKSVVLMSHLGRPEGI |
Parental | PMPEKYSLEPVAVELKSLMGKDVLFLKDCVGPEVEKACADPPNGSIILLENLRFHVEEEGKGKDASGNKI |
PMPEKYSLEPVAVELKSL.GKDVLFLKDCVGPEVEKAC..PP.GSIILLENLRFHVEEEGKGKDASGNKI | |
Retrocopy | PMPEKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACTNPPSGSIILLENLRFHVEEEGKGKDASGNKI |
Parental | KADPAKVEAFQASLSKLGDIYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELTYFAKALESPERPFLA |
KADPAKVEAFQASLSKLGDIYVNDAFGTAHRAHSSMVGV.LPQK.SGFLMKKELTYF.KALESPERPFLA | |
Retrocopy | KADPAKVEAFQASLSKLGDIYVNDAFGTAHRAHSSMVGVILPQKVSGFLMKKELTYFSKALESPERPFLA |
Parental | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMAKAEKNGVKI |
ILGGAKVADKIQLINNMLDKVNEMIIGGGM..TF.KVLNNMEIGTSLFDEEGA.IVKDLMAKAEKNGVKI | |
Retrocopy | ILGGAKVADKIQLINNMLDKVNEMIIGGGMSYTFRKVLNNMEIGTSLFDEEGAMIVKDLMAKAEKNGVKI |
Parental | TLPVDFVTAEKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVARAKQIVWNGPVGVFEWEPFAR |
TLPVDFV.A.K.DENAK.GQAT.ASGIPA.WMG.DCGPESSKKYAEAVARAKQIVWNGPVGVFEWEPFAR | |
Retrocopy | TLPVDFVIADKYDENAKIGQATLASGIPAEWMGMDCGPESSKKYAEAVARAKQIVWNGPVGVFEWEPFAR |
Parental | GTKELMNNVVEATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVAALSNV |
GTKELMNNVVEATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVAALS.V | |
Retrocopy | GTKELMNNVVEATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVAALSSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |