RetrogeneDB ID: | retro_rnor_590 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:85035051..85036033(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pgk1 | ||
Ensembl ID: | ENSRNOG00000002467 | ||
Aliases: | Pgk1, Pgk | ||
Description: | Phosphoglycerate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P16617] |
Percent Identity: | 87.92 % |
Parental protein coverage: | 78.66 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGV |
MSLSN.LTLDKLDVKGK.VVMRV.F.VPMKNNQITNNQR.KAAVPSIKFCLD.GA.SVVLM.HLG.PDGV | |
Retrocopy | MSLSNRLTLDKLDVKGKGVVMRVNFIVPMKNNQITNNQRLKAAVPSIKFCLDSGANSVVLMNHLGWPDGV |
Parental | PMPDKYSLEPVAAELKSLLGKDVLFLKDCVGSEVENACANPAAGTVILLENLRFHVEEEGKGKDASGNKV |
PMPDK.SLEPVAAELKSLLGKDVLFLKDCVG.EVENACANPAAGTVILLENL.FHVEEEGKGKDAS.NKV | |
Retrocopy | PMPDKNSLEPVAAELKSLLGKDVLFLKDCVGPEVENACANPAAGTVILLENLCFHVEEEGKGKDASVNKV |
Parental | KAEPAKIDAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA |
KAEPAKID.F.ASLSKL.DVYVN.AFGTAH.AH.S.VG.NL.QKAGGFLMKKELNYFAKALESPE..FLA | |
Retrocopy | KAEPAKIDVF*ASLSKLEDVYVN*AFGTAHQAHISLVGMNLLQKAGGFLMKKELNYFAKALESPE*AFLA |
Parental | I-LGGA-KVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNN-MEIGTSLYDEEGAKIVKDLMAKAEKNG |
I.LG...KVADKIQLINNMLDKVNEMI.GGGMA.TFLKVLN..MEIGTSLYDE.G.K.VKD.M.KAEKNG | |
Retrocopy | I<LGRS*KVADKIQLINNMLDKVNEMILGGGMAVTFLKVLNE<MEIGTSLYDE-GVKMVKDFMSKAEKNG |
Parental | VKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGTESSKKYAEAV |
VKI.LPVDFVTADKFDE.AKTGQATVASGIPAGWMGLDCGTESSK.YAEAV | |
Retrocopy | VKIILPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGTESSKIYAEAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 322 .24 RPM |
SRP017611_kidney | 0 .14 RPM | 446 .19 RPM |
SRP017611_liver | 0 .00 RPM | 184 .97 RPM |