RetrogeneDB ID: | retro_lafr_13 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_0:114178303..114179557(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000008546 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGK1 | ||
Ensembl ID: | ENSLAFG00000011954 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGI |
MSLS.KLTLDKLDVKGKRVVMRVDFNVPMK.NQITNNQRIKA.IPSIK.CLDNGAKSVVL.SHLGRPDG. | |
Retrocopy | MSLSSKLTLDKLDVKGKRVVMRVDFNVPMKQNQITNNQRIKASIPSIKYCLDNGAKSVVLLSHLGRPDGV |
Parental | PMPDKYSLEPVAVELRSLLGKDVLFLKDCVGPEVEKACADPASGSVILLENLRFHVEEEGKGKDASGNKI |
PMPDKYSLEPVA.EL.SLL.KDVLFLKDCVG.EVEKACA.PA.GSVILLENLRFHVEEEGKG.DASG.KI | |
Retrocopy | PMPDKYSLEPVAAELKSLLDKDVLFLKDCVGSEVEKACANPAAGSVILLENLRFHVEEEGKGQDASGKKI |
Parental | KAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALENPERPFLA |
KAEPAK.EAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKA.GFLMKKEL.YF.KALENPERPFLA | |
Retrocopy | KAEPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELEYFSKALENPERPFLA |
Parental | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNSMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI |
ILGG.KVADKIQLI.NMLDKVNEMIIGGGMA.TFLKVLN.MEIG.SLFDEEGAKIV.D..SKA..NGVK. | |
Retrocopy | ILGGSKVADKIQLIKNMLDKVNEMIIGGGMAYTFLKVLNNMEIGASLFDEEGAKIVTDIISKAKNNGVKM |
Parental | TLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESNKKYAEAVARAKQIVWNGPVGVFEWEAFAR |
T.PVDFVTADKFDENAK.GQATVASGIPAGWMGLDCGPESNKKYAE.V..AK.IVWNGPVGVFEW.AF.. | |
Retrocopy | TFPVDFVTADKFDENAKVGQATVASGIPAGWMGLDCGPESNKKYAEIVSQAKLIVWNGPVGVFEWSAFSQ |
Parental | GTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVAALSSV |
GTKALMDE.VKATS.GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGV.ALS.. | |
Retrocopy | GTKALMDEIVKATSKGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |