RetrogeneDB ID: | retro_itri_65 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393427.1:3604354..3605608(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000025730 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000001972 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSNKLTLDKLDVKGKRVIMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGV |
MSLSNKLTLDKLDVKGKRVIMRVDFNVPMKNNQITNNQRIKAAVPSIKFCL.NGAKSVVLMSHLGRPDGV | |
Retrocopy | MSLSNKLTLDKLDVKGKRVIMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLANGAKSVVLMSHLGRPDGV |
Parental | PMPDKYSLEPVAAELKSLLGKDVLFLKDCVGPEVEKACANPPAGSVILLENLRFHVEEEGKGKDASGNKV |
PMPDKYSLEPVAAELKSLLGKDVLFLKD.VGPEVEKACANPPAGSVILLENL.FHVEEEGKGKDASGNKV | |
Retrocopy | PMPDKYSLEPVAAELKSLLGKDVLFLKDRVGPEVEKACANPPAGSVILLENLCFHVEEEGKGKDASGNKV |
Parental | KAEPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA |
KAEPAKVEAFR.SLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA | |
Retrocopy | KAEPAKVEAFRESLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA |
Parental | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSKIVKDLMSKAEKNGVKI |
ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSKIVKDLMSKAEKNGVKI | |
Retrocopy | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSKIVKDLMSKAEKNGVKI |
Parental | TLPVDFVTADKFDENAKTGQATVASGIPDGWMGLDCGPESSKKYAEAVGRAKQIVWNGPVGVFEWEAFAR |
TLPVDFVTADKFDENAKTGQATVASGIP.GWMGLDCGPESSKKYAEAVGR.KQIVWNGPVGVFEWEAFAR | |
Retrocopy | TLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVGRTKQIVWNGPVGVFEWEAFAR |
Parental | GTKALMDEVVKATARGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV |
GTKALMDEVVKA.ARGCITIIGGGDTATCCAKWNT.DKVSHVSTGGGASLELLEGKVLPGVDALSNV | |
Retrocopy | GTKALMDEVVKAIARGCITIIGGGDTATCCAKWNTQDKVSHVSTGGGASLELLEGKVLPGVDALSNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |